MmuEX6004232 @ mm10
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48466675-48467763:+
Coord C1 exon
chr6:48466675-48466869
Coord A exon
chr6:48466957-48467084
Coord C2 exon
chr6:48467598-48467763
Length
128 bp
Sequences
Splice sites
3' ss Seq
CCTTCCCTGTTCCCTCTCAGGCA
3' ss Score
10.43
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
ATGCCTGCTATTCTCCCCTGGGCCTGGCTGGATTGCCCATGTGGGCACCATCCCAGCACTGGGAACACATCACCAGGGCTGACCCTGTGGAAGCTCCCATGGCAGGGCCTGGCCCCAGAGAGGGGGCTTCTGCTGAGTGGCACACCCAGCCACTCTATCTACAGCTGGACCTTCGTCGGCCTCGGAACCTCACTG
Seq A exon
GCATCATCGTGCAGAGGGCTGGCTCCTCTGCCGCTTATGTCTCCACTTTGTCACTCCAGTTTAGCAGCGACAATCTACAGTGGCACAACTATGTCAACTCTCTGTCTAGTACCCTGTCTCCACCCAAG
Seq C2 exon
CCTTCCCCGGAGAGCTCAAACCATATGGCCCCTGAGGTATGGACATTTGACCAGATGGTACAGGCAAGGTACATCCGGGTGTGGCCACACAGTGGCCACCTCAGAGACAACAACCAGCACGATATCTTCCTGTGGGTGGAGCTACTGGGCTGTAAGCCAGGAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797-'42-50,'42-42,46-50=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.303 A=0.163 C2=0.259
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PU(26.0=48.5)
A:
PF0075420=F5_F8_type_C=FE(34.1=100)
C2:
PF0075420=F5_F8_type_C=PD(38.2=92.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTGGGAACACATCACCAGG
R:
GTTGTTGTCTCTGAGGTGGCC
Band lengths:
253-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types