HsaEX6011202 @ hg38
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr7:149795211-149796746:+
Coord C1 exon
chr7:149795211-149795429
Coord A exon
chr7:149795539-149796515
Coord C2 exon
chr7:149796596-149796746
Length
977 bp
Sequences
Splice sites
3' ss Seq
CCTGGCCCCTCCCTCCCCAGGCA
3' ss Score
11.9
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
ACCCCTGCTATTCTCCCCTGGGGCTGGCCGGACTGGCTGAGGGGAGTCTGCATGCATCGTCCCAGCAGCTGGAACACCCCACCCAGGCTGCCCTCCTGGGGGCTCCCACCCAGGGGCCCAGCCCTCAGGGATGGCACGCTGGAGGGGATGCTTATGCCAAGTGGCACACTCGGCCCCATTACCTGCAGCTGGACCTGCTTCAGCCTCGGAACCTCACTG
Seq A exon
GCATCCTAGTGCCGGAGACTGGCTCCTCCAACGCATATGCCAGCAGCTTCTCACTCCAGTTCAGCAGCAATGGTCTACACTGGCATGACTATCGTGACCTCCTGCCTGGCATCTTGCCCCTGCCCAAGGTATCACCCGCCCAAGGCCGATGGGGCCAGCAGCCCACCATGCCCTTTTGTGGGTTCCATAGTCTTTGTCCCCAAGGGCCTTCCAGTGTCCCCGAGGGGCATGGCCTGCATTCGATGCTTGTTGAATACCTGGTGAGTAGCAGGGACTGTGCTCTGTGGAGCCGAGGCTTGGGTGCCACTGTCACATGGATGCTGGAAACCATCCAAGTGGCTCAGACTCAGGGCAGGTATGTGAAGCCTGCAAGGGAGAGAGGATGGGGAGACACCAAGTTCACTGAGGGCCTCCGGGAGCCCAGACCCACGCACGTCTTCGTGGAGAGCAGCCTGGGCACAGCCCTGCCCTCAGGGGGTTTGCATCCTTCCCGGAGACAAACCGCACGAAGCGGTAGGAATCAGTCCGTGCTGTGTTAAGTCTTAACTGTTTCAGGAGCACCTGCTCTGTGCCAGGTGCCGAGCCAGGCCCTGGGGACACAGCAGTGAACAGGACCTGGCCTTTGCCCTAGGGGCACCTCCAGCTTAGCGAGAGGAGCTCAGTCCAGGACCAGCCCCCTCCAGCCTTGAGAGGCCCAAATGCCTACTGCCAGGGTGGGGGGCATGGCTCTGGGAGGGGCCGTGAAAACTGGGGAAAAAGTGGGGTCACTCAAAGTCATGAGGTCAGCCTGAAAAAGAGGTGAAGCTCAGTCATCCGCATCCTCTGCTGGCAGCTTTTCCCCAGAAACTGGGATGACCTGGACCCTGCCGTATGGACTTTCGGCCGCATGGTGCAGGCGAGGTTTGTCAGGGTGTGGCCCCACGATGTCCACCACAGCGATGTCCCCCTGCAGGTGGAGCTGCTGGGCTGCGAGCCAG
Seq C2 exon
GGTCCCCACCGGCACCTCTGTGCCCAGGGGTTGGACTCCGCTGTGCCAGTGGTGAGTGTGTCCTGAGAGGGGGCCCTTGTGACGGTGTTCTGGACTGCGAGGATGGCTCGGATGAGGAGGGCTGTGTGTTGCTGCCTGAGGGCACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558-'53-61,'53-59,55-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCCCTGCTATTCTCCCCTG
R:
CAACACACAGCCCTCCTCATC
Band lengths:
350-1327
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains