HsaEX6011202 @ hg19
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin homolog (Bos taurus) [Source:HGNC Symbol;Acc:21998]
Coordinates
chr7:149492627-149493834:+
Coord C1 exon
chr7:149492627-149492754
Coord A exon
chr7:149493459-149493603
Coord C2 exon
chr7:149493684-149493834
Length
145 bp
Sequences
Splice sites
3' ss Seq
TCCGCATCCTCTGCTGGCAGCTT
3' ss Score
6.28
5' ss Seq
CAGGTACAG
5' ss Score
8.68
Exon sequences
Seq C1 exon
GCATCCTAGTGCCGGAGACTGGCTCCTCCAACGCATATGCCAGCAGCTTCTCACTCCAGTTCAGCAGCAATGGTCTACACTGGCATGACTATCGTGACCTCCTGCCTGGCATCTTGCCCCTGCCCAAG
Seq A exon
CTTTTCCCCAGAAACTGGGATGACCTGGACCCTGCCGTATGGACTTTCGGCCGCATGGTGCAGGCGAGGTTTGTCAGGGTGTGGCCCCACGATGTCCACCACAGCGATGTCCCCCTGCAGGTGGAGCTGCTGGGCTGCGAGCCAG
Seq C2 exon
GGTCCCCACCGGCACCTCTGTGCCCAGGGGTTGGACTCCGCTGTGCCAGTGGTGAGTGTGTCCTGAGAGGGGGCCCTTGTGACGGTGTTCTGGACTGCGAGGATGGCTCGGATGAGGAGGGCTGTGTGTTGCTGCCTGAGGGCACTGGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558-'50-51,'50-49,52-51=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.094 A=0.024 C2=0.235
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGGCTCCTCCAACGCATAT
R:
CAACACACAGCCCTCCTCATC
Band lengths:
242-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)