MmuEX1024897 @ mm10
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48466957-48467990:+
Coord C1 exon
chr6:48466957-48467084
Coord A exon
chr6:48467598-48467763
Coord C2 exon
chr6:48467837-48467990
Length
166 bp
Sequences
Splice sites
3' ss Seq
GCAAGTAATGTCTTCCACAGCCT
3' ss Score
3.86
5' ss Seq
CAGGTCAGC
5' ss Score
7.16
Exon sequences
Seq C1 exon
GCATCATCGTGCAGAGGGCTGGCTCCTCTGCCGCTTATGTCTCCACTTTGTCACTCCAGTTTAGCAGCGACAATCTACAGTGGCACAACTATGTCAACTCTCTGTCTAGTACCCTGTCTCCACCCAAG
Seq A exon
CCTTCCCCGGAGAGCTCAAACCATATGGCCCCTGAGGTATGGACATTTGACCAGATGGTACAGGCAAGGTACATCCGGGTGTGGCCACACAGTGGCCACCTCAGAGACAACAACCAGCACGATATCTTCCTGTGGGTGGAGCTACTGGGCTGTAAGCCAGGAACAG
Seq C2 exon
TGTCCCCGTTGGCACCCCTATGTCCAGGGAGCAGGCACCGCTGTGCCAGTGGTGAATGTGCCCCAAAGGGTGGTCCATGTGATGGTGCTGTGGACTGTGACGATGGCTCTGATGAGGAGGGATGTGGGTCCCTTCATGCAAGCACTACCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.163 A=0.259 C2=0.609
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(34.1=100)
A:
PF0075420=F5_F8_type_C=PD(38.2=92.2)
C2:
PF0005713=Ldl_recept_a=WD(100=71.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCTGCCGCTTATGTCTCCAC
R:
CTGCTGGTAGTGCTTGCATGA
Band lengths:
257-423
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types