GgaEX7001547 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:421773-422602:+
Coord C1 exon
chr2:421773-421870
Coord A exon
chr2:422198-422339
Coord C2 exon
chr2:422416-422602
Length
142 bp
Sequences
Splice sites
3' ss Seq
TCACCGCTGCCCTCCCACAGCTC
3' ss Score
9.53
5' ss Seq
CAGGTACCC
5' ss Score
8.63
Exon sequences
Seq C1 exon
GGGTGGTGGTGCAGGGGGCCGGGGCTGGGGATGCCTTCATCACTGCCTTCCAGCTGCAGTTCAGCACTGATGGGAACCGCTGGCACAACTACCAACAG
Seq A exon
CTCTTCCAGGGCAACTGGGATGCCACCACGCCGGTGGTGCAGCCGCTGGGCCGCATGGTGCAGGCGCGCTACGTCCGCATCCTCCCTCAGAGCTTCCACAACGCCATCTTCCTGCGGGCCGAGCTGCTGGGCTGCCCAACAG
Seq C2 exon
TGCCCCTGGACCTGGCGGTGACGACGGCGGTGACACCAGCACCCTGTGGCACGGGGGAGTTCTGGTGTGGGGTCAGCTGTGTCACGGCATCCCGGAGGTGCGATGGTGCCACCGACTGCCCTGGGGGTGCCGACGAGGCCGGCTGTGAGCCCCCCAGCAGCACCACGCTGCCCACCCACCCTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'43-44,'43-43,45-44=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.413
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(24.1=100)
A:
PF0075420=F5_F8_type_C=PD(30.8=85.4)
C2:
PF0005713=Ldl_recept_a=WD(100=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGCCTTCATCACTGCC
R:
CTCACAGCCGGCCTCGTC
Band lengths:
220-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]