DreEX6096601 @ danRer10
Exon Skipping
Gene
ENSDARG00000067859 | scospondin
Description
subcommissural organ spondin [Source:ZFIN;Acc:ZDB-GENE-051114-1]
Coordinates
chr24:40201625-40203051:+
Coord C1 exon
chr24:40201625-40201752
Coord A exon
chr24:40202213-40202354
Coord C2 exon
chr24:40202825-40203051
Length
142 bp
Sequences
Splice sites
3' ss Seq
GCTGTGGTTGTTTCCTCCAGGTG
3' ss Score
10.21
5' ss Seq
ACGGTACAC
5' ss Score
5.08
Exon sequences
Seq C1 exon
GTGTGTTGACGCAGGGTGGTGGTGTGTTTGACACATTTGTGTCCAGCTTTTATCTGCAGTTCAGCAGTGACGGCCTTCAGTGGTCCACGTATAAAGAGATGATCACCGACGCCAGGCCCAAAGCAAAG
Seq A exon
GTGTTTCAGGGAAACAGTGATGACCGCGGTGTATCTCTGGCCCGTCTGGACCGGATGGTGTCAGCTCGGTTCATCAGGATTCTCCCTCATGATTTCCAGAATGGGATATATCTGAGAGTGGAAATCATGGGATGCCCTGACG
Seq C2 exon
GCACTGGTCCTGGTGCTGTGTGTCCGCCGGGACATTTCCTCTGTCCTGCACCTCCTCCAGGACTCTGCATTGAGGAGAAGCTCCTCTGCGATGGAGTTCCTCACTGTCCTGATGGAGCGGATGAGAGAGACTGTAAACACACTAACATTAGCCACATCACCCCGACTGCTGCTGCGCTCAGGACACCCAGCAAAATCAGGACCACACCGACCCTTCTGACCACCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067859-'42-45,'42-44,43-45=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.093 A=0.125 C2=0.408
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=FE(26.8=100)
A:
PF0075420=F5_F8_type_C=PD(26.1=85.4)
C2:
PF0005713=Ldl_recept_a=WD(100=52.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGGTGGTGGTGTGTTTGAC
R:
CAGTCTCTCTCATCCGCTCCA
Band lengths:
250-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]