GgaEX7001548 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:421441-422339:+
Coord C1 exon
chr2:421441-421659
Coord A exon
chr2:421773-421870
Coord C2 exon
chr2:422198-422339
Length
98 bp
Sequences
Splice sites
3' ss Seq
TTCCACATCTCCCCCAACAGGGG
3' ss Score
8.62
5' ss Seq
CAGGTCTCT
5' ss Score
1.07
Exon sequences
Seq C1 exon
ACCCCTGCTACAGCCCCTTGGGCATCGCCTCCTTGCCCGATAGCAGCTTCACCGCCTCAGCCGAGCAGCAGCAGCACCCAGCCCGTGCTGCTCGTCTGCACCACGTCTCCCCGGGGCTGGAGTTGCAGGGCTGGGCCCCCCCAGCTGACACCGTCCCTGGTCTGCCTTCCCACCTACCCTTCCTGCAGCTGGACCTGCTGCAGACCACCAACCTCACCG
Seq A exon
GGGTGGTGGTGCAGGGGGCCGGGGCTGGGGATGCCTTCATCACTGCCTTCCAGCTGCAGTTCAGCACTGATGGGAACCGCTGGCACAACTACCAACAG
Seq C2 exon
CTCTTCCAGGGCAACTGGGATGCCACCACGCCGGTGGTGCAGCCGCTGGGCCGCATGGTGCAGGCGCGCTACGTCCGCATCCTCCCTCAGAGCTTCCACAACGCCATCTTCCTGCGGGCCGAGCTGCTGGGCTGCCCAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'42-43,'42-42,43-43=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.324 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PU(43.6=78.4)
A:
PF0075420=F5_F8_type_C=FE(24.1=100)
C2:
PF0075420=F5_F8_type_C=PD(30.8=85.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTTCCCACCTACCCTTCCTG
R:
CAGGAAGATGGCGTTGTGGAA
Band lengths:
169-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]