DreEX6096602 @ danRer10
Exon Skipping
Gene
ENSDARG00000067859 | scospondin
Description
subcommissural organ spondin [Source:ZFIN;Acc:ZDB-GENE-051114-1]
Coordinates
chr24:40199395-40202354:+
Coord C1 exon
chr24:40199395-40199643
Coord A exon
chr24:40201625-40201752
Coord C2 exon
chr24:40202213-40202354
Length
128 bp
Sequences
Splice sites
3' ss Seq
CTCTCCGTCTGGTGTTGTAGGTG
3' ss Score
9.81
5' ss Seq
AAGGTCTAT
5' ss Score
1.69
Exon sequences
Seq C1 exon
ATGAGTGTTGGTCAGCTCTGGGTGTTCAGTCGCTCCCTGCTGTCAGCTTCAGCTCCTCATCCCACCAGGCCGGTCACCCTCCGTCTGCTGGACGTCTGAACACTGGAGACCCTCACCGAGACCTGCAGGGCTGGAGCCCGGAACCGGAGCAGTACAAAGAGCTCCCGCACGGGACGCCAGAGGACACCAGACACCCCTCACACGGCCCGTACCTGCAGATAGACCTGCTCACACAACACAACATCACAG
Seq A exon
GTGTGTTGACGCAGGGTGGTGGTGTGTTTGACACATTTGTGTCCAGCTTTTATCTGCAGTTCAGCAGTGACGGCCTTCAGTGGTCCACGTATAAAGAGATGATCACCGACGCCAGGCCCAAAGCAAAG
Seq C2 exon
GTGTTTCAGGGAAACAGTGATGACCGCGGTGTATCTCTGGCCCGTCTGGACCGGATGGTGTCAGCTCGGTTCATCAGGATTCTCCCTCATGATTTCCAGAATGGGATATATCTGAGAGTGGAAATCATGGGATGCCCTGACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067859-'41-44,'41-43,42-44=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.655 A=0.093 C2=0.125
Domain overlap (PFAM):
C1:
PF0075420=F5_F8_type_C=PU(45.9=85.7)
A:
PF0075420=F5_F8_type_C=FE(26.8=100)
C2:
PF0075420=F5_F8_type_C=PD(26.1=85.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGCTGGACGTCTGAACAC
R:
CTGATGAACCGAGCTGACACC
Band lengths:
244-372
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]