RnoEX6013523 @ rn6
Exon Skipping
Gene
ENSRNOG00000025848 | Sspo
Description
SCO-spondin [Source:RGD Symbol;Acc:1549716]
Coordinates
chr4:78083661-78084631:+
Coord C1 exon
chr4:78083661-78083813
Coord A exon
chr4:78084098-78084269
Coord C2 exon
chr4:78084391-78084631
Length
172 bp
Sequences
Splice sites
3' ss Seq
AGGATGTCCCTTCCCTACAGGTT
3' ss Score
10.13
5' ss Seq
GTGGTACAC
5' ss Score
0.92
Exon sequences
Seq C1 exon
CCTGGGTGTCTGGATACAGTGGAGGTAGCCCGGGGCTGTGAGGGCCTCCTAGAAGGTACATTAACTGGCTTGGAAGCTGGCAAGCTTCAAGCTCAAGCCCAGGACTTGTGCCACCAACTGCTGGAGGATCCATTCTCGCAATGTCATGGACAG
Seq A exon
GTTCCCCCAGATGAGTACCATGAGACCTGCCTCTTTGCTTACTGTGTTGGAGCCACAGCAGGCAGTGGCCCGGAGGAGCAAGTGAAGGCTGTGTGTGCCACCTTTGCCAACTATGCCCAGGCCTGTGCCAGGCAGCACATCTATGTGCACTGGAGGAAGCCTGGCTTCTGTG
Seq C2 exon
AACGTTTGTGTCCAGGGGGGCAGCTCTACTCTGACTGCATCTCATCCTGTCCACCCAGCTGTTCTGCAGTAGCCCAGGGCGAGGAGGGGTCTTGTGGGAAAGAGTGTGTGAGTGGCTGTGAGTGCCCGACCGGCCTCTTCTGGGATGGTGCTCTCTGTGTGCCTGCTGCCCATTGCCCTTGCTACTACCGGCGCCAGCGCTACGCCCCTGGTGACACTGTGAAACAGCAGTGCAACCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025848-'8-9,'8-8,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(26.2=41.2)
A:
PF087426=C8=FE(71.2=100)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=69.1),PF0009313=VWC=PU(38.5=24.7),PF053758=Pacifastin_I=PU(37.5=14.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCAAGCTCAAGCCCAGGAC
R:
GGTAGTAGCAAGGGCAATGGG
Band lengths:
258-430
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]