DreEX6096625 @ danRer10
Exon Skipping
Gene
ENSDARG00000067859 | scospondin
Description
subcommissural organ spondin [Source:ZFIN;Acc:ZDB-GENE-051114-1]
Coordinates
chr24:40146160-40148755:+
Coord C1 exon
chr24:40146160-40146285
Coord A exon
chr24:40146360-40146516
Coord C2 exon
chr24:40148515-40148755
Length
157 bp
Sequences
Splice sites
3' ss Seq
TTTAATCTTGTGTTCTCCAGGTG
3' ss Score
11.16
5' ss Seq
GTGGTACTG
5' ss Score
2.53
Exon sequences
Seq C1 exon
GTGTGCAGTGATGCTGCTGAATTGGGCCACAGCTGTGATCTGTCCAATGATGTTTCTCTACGGAGAGATGCAGAATCAGCCTGTCATCTTCTGAAAGAGACTCCGTTCTCTCACTGCCATCATCAG
Seq A exon
GTGGATCCCGGGCCGTATATTGACACCTGCCTGTATCTGTTCTGCAGTTTGGAGGTAAAAGACAGAGATACTGCTGTGTGTGACACACTAGCGAGCTACGTGCGCGAGTGTGCTCAACAACACATCATTATCAGCTGGAGGAGAAGAGGATTTTGTG
Seq C2 exon
AGCGTGTGTGTCCTCGAGGTCAGGTGTTTTCTGACTGCGTGTCCTCCTGTCCGGCCACATGTGCGTCTCCTCGACCTCCAGCAGCGGGTCAGTGTCGGGACGAGTGTGTGGGGGGATGTGAGTGTCCTCAGGGTGTGTATCTACACGCGGGACAGTGTGTGAGGCGGGATGACTGCCCCTGCTTCCACAGACGACACTCCTACAGCGCAGGACAAACCATCAGACAGAGATGCAACACCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000067859-'9-12,'9-11,10-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(28.0=50.0)
A:
PF087426=C8=FE(69.3=100)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=69.1),PF0009313=VWC=PU(38.5=24.7),PF053758=Pacifastin_I=PU(37.5=14.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGTTCTCTCACTGCCATCA
R:
ATGGTTTGTCCTGCGCTGTAG
Band lengths:
245-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]