HsaEX0061911 @ hg38
Exon Skipping
Gene
ENSG00000197558 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr7:149779534-149782299:+
Coord C1 exon
chr7:149779534-149779686
Coord A exon
chr7:149779960-149780131
Coord C2 exon
chr7:149782182-149782299
Length
172 bp
Sequences
Splice sites
3' ss Seq
GGGGCCGTCCTTTCCTGCAGGTT
3' ss Score
10.16
5' ss Seq
GCGGTACTG
5' ss Score
4.48
Exon sequences
Seq C1 exon
TCTGGGTGTCTGGATGCAGTGGAGGTGGCCCAGGGCTGTGACAGCCCCCTGGGGCTCATAGACGCAGATGTAGAACCTGGCCACCTGCGGGCTGAAGCCCAGGACGTGTGCCATCAGCTGCTGGAAGGTCCATTCGGGCAGTGCCATGCCCAG
Seq A exon
GTTTCCCCTGCTGAGTACCACGAGGCCTGTCTCTTTGCCTACTGCGCAGGGGCCATGGCAGGCAGTGGGCAAGAGGGGCGGCAGCAGGCTGTTTGTGCCACCTTTGCCAGCTATGTCCAGGCCTGTGCCAGGCGGCACATCCACATTCGCTGGAGGAAGCCTGGCTTCTGCG
Seq C2 exon
GACTATGTGAAGGGACAGCTACTGATCCTACTGGAGCATGGGGCCTGCGACGCTGGGAGCTGCCTGCACGCCATCTCCGTCTCCCTGGAGGACACCCACATCCAGCTCAGGGACTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000197558_MULTIEX6-3/5=2-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NonCoding
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGGTGTCTGGATGCAGTG
R:
CTCCAGGGAGACGGAGATGG
Band lengths:
243-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development