MmuEX0045059 @ mm10
Exon Skipping
Gene
ENSMUSG00000029797 | Sspo
Description
SCO-spondin [Source:MGI Symbol;Acc:MGI:2674311]
Coordinates
chr6:48451733-48452703:+
Coord C1 exon
chr6:48451733-48451885
Coord A exon
chr6:48452163-48452334
Coord C2 exon
chr6:48452463-48452703
Length
172 bp
Sequences
Splice sites
3' ss Seq
AGGATCTCCCTTCCCTACAGGTT
3' ss Score
9.96
5' ss Seq
GTGGTATGC
5' ss Score
5.97
Exon sequences
Seq C1 exon
CCTGGGTGTCTGGATGCGGTGGAAGTGGCTTGGGGCTGTGAGAGCCTCCTAGGAGGTACATTAACTGACTTGGAAGCTGTCAAGCTTCAAGCTCAAGCTCAGGACATGTGCCACCAACTGCTGGAGGGTCCATTCTGGCAATGTCATGGACAG
Seq A exon
GTTCAGCCAGATGAGTACCATGAGACCTGTCTCTTTGCCTACTGTGTTGGAGCCACAGCAGGCAATGGCCCAGAGGGGCAACTGGAGGCTGTGTGTGCCACCTTTGCCAACTATGCCCAGGCCTGTGCCAGGCAGCACATCTATGTGCACTGGAGGAAGCCTGGCTTCTGTG
Seq C2 exon
AACGTGTGTGTCCAGGGGGGCAGCTCTACTCTGATTGTGTCTCATCCTGTCCACCCAGCTGTTCAGCAGTAGCCCAGGGAGAGGAGGGGTCTTGTGGGAAAGAGTGTGTGAGTGGCTGTGAGTGCCCAACAGGCCTCTTCTGGGATGGTGCCCTCTGTGTGCCTGCTGCCCACTGCCCCTGCTACCACCGGCGCCAGCGCTACGCTCCTGGTGACACCGTGAAACAGCAGTGCAATCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000029797_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(26.2=41.2)
A:
PF087426=C8=FE(71.2=100)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=69.1),PF0009313=VWC=PU(40.0=24.7),PF053758=Pacifastin_I=PU(37.5=14.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGTCCATTCTGGCAATG
R:
GTTTCACGGTGTCACCAGGAG
Band lengths:
256-428
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types