GgaEX7001565 @ galGal4
Exon Skipping
Gene
ENSGALG00000004919 | SSPO
Description
SCO-spondin [Source:HGNC Symbol;Acc:HGNC:21998]
Coordinates
chr2:409627-411089:+
Coord C1 exon
chr2:409627-409749
Coord A exon
chr2:409819-409981
Coord C2 exon
chr2:410849-411089
Length
163 bp
Sequences
Splice sites
3' ss Seq
GACGGTCCATCCCACACCAGGTC
3' ss Score
6.8
5' ss Seq
GCGGTACGG
5' ss Score
8.53
Exon sequences
Seq C1 exon
CTCTCCTGCAGTGATGCAGTGGAGCCCAGTCCTGGCTGTGCCATGGGCAGCACAGCACAGCGGGCAGCCGAGGCCATGTGTGGGATGCTGCTCACCGACCCCTTCCGCCAGTGCCACGAAGCA
Seq A exon
GTCGACCCCCATGGCTTTTACGAGGCCTGCCTGGAGCTGCACTGCAGGGAGGGGGGCACGGGGCCCTCACCACCCCCTGCTGTCTGTGACACATTGGCCACGTACGTGAGGGACTGTGCCCAGCGGAGAGCCTACATTGAGTGGCGCCGGCCGGGCCTCTGCG
Seq C2 exon
AGCGGCAGTGCGGCCACGGGCAGCGCTACTCGGACTGCGTGTCCTCCTGTCCCGCCAGCTGCATGGCTGCAGGCACTGCCGAGGAGGGGCACTGCCGGGACAACTGCGCCAGCGGCTGTGAGTGCACCCCGGGGCTCCTCCTGGACAGGGGGGCCTGCATCCCACAGAGCGCCTGCCCCTGCCTGCACCGTGGCCACATATATGCCCCAGGACAGAGCATCCGCCAGCGCTGCAACCAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004919-'9-10,'9-9,10-10=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.024 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF087426=C8=PU(27.3=51.2)
A:
PF087426=C8=FE(70.1=100)
C2:
PF087426=C8=PD(0.1=0.0),PF0182612=TIL=WD(100=69.1),PF0009313=VWC=PU(32.8=24.7),PF053758=Pacifastin_I=PU(37.5=14.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTGTGGGATGCTGCTCAC
R:
CATATATGTGGCCACGGTGCA
Band lengths:
253-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]