RnoEX6015879 @ rn6
Exon Skipping
Gene
ENSRNOG00000016584 | Mamdc4
Description
MAM domain containing 4 [Source:RGD Symbol;Acc:708583]
Coordinates
chr3:2789946-2790499:-
Coord C1 exon
chr3:2790368-2790499
Coord A exon
chr3:2790138-2790262
Coord C2 exon
chr3:2789946-2790057
Length
125 bp
Sequences
Splice sites
3' ss Seq
ATACTAACTCCCTTGATCAGGCT
3' ss Score
5.09
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGCACTTCCTATCTCTGCGGAAGGCCTGGGGGCAGCTACGATCTGAGGCCCGGGCTCTCACACCTGCTCTGGGCCCCTCTGGCCCTCACTGTGAACTCCACATGACTTACTATTTTCACAGTCATCCCCAAG
Seq A exon
GCTTCTTGGCACTGGCTGTGGTGGAGAATGGCTTCCGGGAGCTGCTGTGGCAGGCTCCAAGCAGCAGCAGTGGGGGCTGGACACTACAGAAGATTCTTCTTGGGGCACGGCGCCGGCCATTCCAG
Seq C2 exon
CTGGAGTTCGTCAGTCTGGTGGACTTGGATGGCCCTGGCCAACAGGGGGCTGGGGTGGATAATGTGACCCTGAGAGACTGCAACCCCATGGTGACCACTGAGAGTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016584-'14-15,'14-14,15-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.133 A=0.000 C2=0.184
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(28.2=100)
A:
PF0062918=MAM=FE(26.3=100)
C2:
PF0062918=MAM=PD(17.9=73.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACTTCCTATCTCTGCGGA
R:
ACTCTCAGTGGTCACCATGGG
Band lengths:
237-362
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]