MmuEX6099579 @ mm9
Exon Skipping
Gene
ENSMUSG00000026941 | Mamdc4
Description
MAM domain containing 4 [Source:MGI Symbol;Acc:MGI:2685841]
Coordinates
chr2:25422232-25422778:-
Coord C1 exon
chr2:25422647-25422778
Coord A exon
chr2:25422424-25422548
Coord C2 exon
chr2:25422232-25422343
Length
125 bp
Sequences
Splice sites
3' ss Seq
ATACTAATTCCCTTCATCAGGCT
3' ss Score
5.84
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGCACTTCCTATCTCTGCAGAAGGCCTGGGGGCAGCTAAGATCTGAGGCCCGGGCTCTCACACCTGCTCTGGGCCCCTCTGGCCCTCACTGTGAACTCCACATGGCTTACTATTTTCAAAGTCACCCCCAAG
Seq A exon
GCTTCTTGGCACTGGTTGTGGTGGAGAATGGCTTCCGGGAGCTGCTGTGGCAAGCCCCAGGCGGCGGCAGCGGGAGCTGGACAGAGGAGAAGATTATTCTCGGGGCACGGCGCCGGCCGTTCCAG
Seq C2 exon
CTGGAGTTTGTCAGTCTGGTGGACTTGGATGGCCCTGGCCAGCAGGGGGCTGGGGTGGACAATGTGACTCTGAGAGACTGCAACCCCATGGTGACCACTGAAAGTGACCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026941-'24-26,'24-25,25-26=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.048 C2=0.158
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(28.2=100)
A:
PF0062918=MAM=FE(26.3=100)
C2:
PF0062918=MAM=PD(17.9=73.7)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACTTCCTATCTCTGCAGA
R:
CTTTCAGTGGTCACCATGGGG
Band lengths:
236-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: