GgaEX6014703 @ galGal3
Exon Skipping
Gene
ENSGALG00000008995 | MAMDC4
Description
NA
Coordinates
chr17:941435-941990:-
Coord C1 exon
chr17:941842-941990
Coord A exon
chr17:941613-941743
Coord C2 exon
chr17:941435-941540
Length
131 bp
Sequences
Splice sites
3' ss Seq
GCACCATCTCTCATGCTCAGGTT
3' ss Score
7.19
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GCCGTTTCCTTGCCCAGGGGCTTTCTTGGCCCTTCAGAGAGGAGAAGGACAAATGGTGGCTCCCGCCAAGGCCCGCACGCCTCTGCTGGGTCCCTCCGGCCTGGCCTGCGCCATGGAGATGAGCTACCGCCTGCACAGCGGCGCCCAAG
Seq A exon
GTTTCCTCGCTGTTGCTGTCACGGAGCACTCCACGGACATGACGCACCTGGCCTGGCACACGCGGGGGCACGGCAGCACAGCCTGGGAGCACGTCCACATCCCGCTGGGGGAGAGGGCCCGGCCCTTCCAG
Seq C2 exon
GTCGAGCTGCTGGGGATGGCGGAGCTGCAGGACCCCGAGGCCATCGCCATCGCCAACGTGACGTTCGTGCAGTGCAACCCTGGCGTGGAGCCCCCCGAGGCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995-'17-20,'17-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.097 A=0.216 C2=0.160
Domain overlap (PFAM):
C1:
PF0062918=MAM=PU(41.3=55.6)
A:
PF0062918=MAM=FE(35.5=100)
C2:
PF0062918=MAM=PD(16.0=72.2)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTCCTTGCCCAGGGG
R:
CACGCCAGGGTTGCACTG
Band lengths:
234-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]