GgaEX6014703 @ galGal4
Exon Skipping
Gene
ENSGALG00000008995 | MAMDC4
Description
MAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24083]
Coordinates
chr17:559168-559723:-
Coord C1 exon
chr17:559575-559723
Coord A exon
chr17:559346-559476
Coord C2 exon
chr17:559168-559273
Length
131 bp
Sequences
Splice sites
3' ss Seq
GCACCATCTCTCATGCTCAGGTT
3' ss Score
7.19
5' ss Seq
CAGGTATGG
5' ss Score
9.99
Exon sequences
Seq C1 exon
GCCGTTTCCTTGCCCAGGGGCTTTCTTGGCCCTTCAGAGAGGAGAAGGACAAATGGTGGCTCCCGCCAAGGCCCGCACGCCTCTGCTGGGTCCCTCCGGCCTGGCCTGCGCCATGGAGATGAGCTACCGCCTGCACAGCGGCGCCCAAG
Seq A exon
GTTTCCTCGCTGTTGCTGTCACGGAGCACTCCACGGACATGACGCACCTGGCCTGGCACACGCGGGGGCACGGCAGCACAGCCTGGGAGCACGTCCACATCCCGCTGGGGGAGAGGGCCCGGCCCTTCCAG
Seq C2 exon
GTCGAGCTGCTGGGGATGGCGGAGCTGCAGGACCCCGAGGCCATCGCCATCGCCAACGTGACGTTCGTGCAGTGCAACCCTGGCGTGGAGCCCCCCGAGGCTGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995-'20-28,'20-27,21-28=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.081 A=0.205 C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(31.0=100)
A:
PF0062918=MAM=FE(27.7=100)
C2:
PF0062918=MAM=PD(16.8=72.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTTCCTTGCCCAGGGG
R:
CACGCCAGGGTTGCACTG
Band lengths:
234-365
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]