MmuEX6099579 @ mm10
Exon Skipping
Gene
ENSMUSG00000026941 | Mamdc4
Description
MAM domain containing 4 [Source:MGI Symbol;Acc:MGI:2685841]
Coordinates
chr2:25566452-25567258:-
Coord C1 exon
chr2:25567127-25567258
Coord A exon
chr2:25566904-25567028
Coord C2 exon
chr2:25566452-25566568
Length
125 bp
Sequences
Splice sites
3' ss Seq
ATACTAATTCCCTTCATCAGGCT
3' ss Score
5.84
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
Exon sequences
Seq C1 exon
GGCACTTCCTATCTCTGCAGAAGGCCTGGGGGCAGCTAAGATCTGAGGCCCGGGCTCTCACACCTGCTCTGGGCCCCTCTGGCCCTCACTGTGAACTCCACATGGCTTACTATTTTCAAAGTCACCCCCAAG
Seq A exon
GCTTCTTGGCACTGGTTGTGGTGGAGAATGGCTTCCGGGAGCTGCTGTGGCAAGCCCCAGGCGGCGGCAGCGGGAGCTGGACAGAGGAGAAGATTATTCTCGGGGCACGGCGCCGGCCGTTCCAG
Seq C2 exon
AGCTCTCCTGTAACTTTGAACGGGACTCCTGCAGCTGGCATACAGGCCACCTCACAGATGCCCACTGGCACCGTATAAAAAGCCACGGCTCTCAGCTTGACCACACAACTGGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026941_MULTIEX1-1/2=C1-C2
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.048 C2=0.050
Domain overlap (PFAM):
C1:
PF0062918=MAM=FE(28.2=100)
A:
PF0062918=MAM=FE(26.3=100)
C2:
PF0062918=MAM=PD(3.4=7.5),PF0062918=MAM=PU(22.6=87.5)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCACTTCCTATCTCTGCAGA
R:
CCAGTTGTGTGGTCAAGCTGA
Band lengths:
244-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types