RnoEX6015887 @ rn6
Exon Skipping
Gene
ENSRNOG00000016584 | Mamdc4
Description
MAM domain containing 4 [Source:RGD Symbol;Acc:708583]
Coordinates
chr3:2787840-2788436:-
Coord C1 exon
chr3:2788346-2788436
Coord A exon
chr3:2788080-2788226
Coord C2 exon
chr3:2787840-2787974
Length
147 bp
Sequences
Splice sites
3' ss Seq
CACCTTCCAATTCCTTGCAGGGT
3' ss Score
9.7
5' ss Seq
CAGGTACAT
5' ss Score
7.79
Exon sequences
Seq C1 exon
GTAGTGTTTGAGGCTATGGCTTCTGGCGTGGAACATTCCTACATGGCTCTGGATGACATTTCCCTCCAAGATGGGCCCTGTGCTCAGCCAG
Seq A exon
GGTCCTGTGACTTTGAATCTGGCCTGTGTGGGTGGAGCCACCTGCCTTGGCCTGGTCTGGGTGGGTACAGCTGGGACTGGAGCAGTGGAGCCACTCCATCCCGGTACCCCCGGCCTTCAGTGGACCACACTGTGGGCACAGAAGCAG
Seq C2 exon
GCCACTTCGCTTTCTTTGAAACCAGCGTGCTAGGTCCTGGGGGCCAGGCAGCCTGGCTGCGCAGTGAGCCACTGCCAGCAACTGCAGTCTCCTGCCTCCACTTCTGGTACTACATGGGCTTTCCTGCGCATTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000016584-'23-25,'23-23,24-25=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.080 C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(17.8=90.3)
A:
PF0062918=MAM=PU(28.3=94.0)
C2:
PF0062918=MAM=FE(27.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAGTGTTTGAGGCTATGGCT
R:
AGAAATGCGCAGGAAAGCCC
Band lengths:
226-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]