DreEX6083743 @ danRer10
Exon Skipping
Gene
ENSDARG00000087633 | MAMDC4
Description
MAM domain containing 4 [Source:HGNC Symbol;Acc:HGNC:24083]
Coordinates
chr21:14692728-14693623:-
Coord C1 exon
chr21:14693530-14693623
Coord A exon
chr21:14692977-14693123
Coord C2 exon
chr21:14692728-14692853
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGAGCTTATGTGTGTTTCAGACA
3' ss Score
8
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CTGCAGTTTGAGGTGAAAGGAGGAGGAGGAGGCAGTTCAAGTTTTATTGCCATTGATGATGTCACCTACTCCACCCACAGCTGCCCTCCAAAAG
Seq A exon
ACAGCGTTTGCGATTTTGAGAATGGTTTGTGTAGTTGGTCCAACACTCAAAATCCATCCCTAGACTGGTTAGATTGGGATGTGACCAGTGCGCAAACTGAGATGTTCTACAACACACCACCATACGACCGAACATCAAACACAGAAG
Seq C2 exon
GACATTTCCTGGTGCTTCCTAATTCGGATCGGGACACTGCTACCCATAATGCTTTGTTGCTGAGCCCGCATCTGTCATCAACCAAAGGAACCTGTCTGAGCTTTTGGGTCTATCAGCCAACCATAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000087633-'17-20,'17-19,18-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.062 A=0.140 C2=0.116
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(18.4=90.6)
A:
PF0062918=MAM=PU(29.1=92.0)
C2:
PF0062918=MAM=FE(26.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCAGTTTGAGGTGAAAGGAGG
R:
GTATGGTTGGCTGATAGACCCA
Band lengths:
219-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]