GgaEX6014711 @ galGal3
Exon Skipping
Gene
ENSGALG00000008995 | MAMDC4
Description
NA
Coordinates
chr17:938056-938900:-
Coord C1 exon
chr17:938810-938900
Coord A exon
chr17:938545-938691
Coord C2 exon
chr17:938056-938190
Length
147 bp
Sequences
Splice sites
3' ss Seq
TAACTCACGTTTCCACCCAGCAT
3' ss Score
3.53
5' ss Seq
ATGGTAGGA
5' ss Score
6.66
Exon sequences
Seq C1 exon
GTGGTGTTTGAGGCGGTGGGAGCTGGGAGTGAGCGCAGCTACATGGCACTGGATGACCTGCGTGTGTCAGATGGAGCCTGCCCTGAGCCAG
Seq A exon
CATCCTGTGACTTTGAGTGGGACACGTGCGGCTGGAGCAGCCCCTCAGATGAGCGCCTGCACGGCTTCACCTGGGGCTGGAAGAGTGGTGTCCCCCTGGCCAAGTACCCCGGCCCTGAACAGGACCACACCCTGGGCACAGAGGATG
Seq C2 exon
GTCACTATGTGCACTTCGACACCCGCGTGCTGGGCGCGGGGGGCACCGCTGCCCGGCTGGAGAGCCAACACCTCCCCGCCACCACTGCCGGCTGCCTGCGCTTCTGGTACCACATGGACATCCCGGAGCACCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008995-'30-33,'30-32,32-33=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.260 C2=0.043
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(18.1=90.3)
A:
PF0062918=MAM=PU(28.3=94.0)
C2:
PF0062918=MAM=FE(27.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGTTTGAGGCGGTGG
R:
TGAGGTGCTCCGGGATGTC
Band lengths:
226-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]