BtaEX0021111 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021550 | MAMDC4
Description
Bos taurus MAM domain containing 4 (MAMDC4), mRNA. [Source:RefSeq mRNA;Acc:NM_001143873]
Coordinates
chr11:106326674-106327327:-
Coord C1 exon
chr11:106327237-106327327
Coord A exon
chr11:106326951-106327097
Coord C2 exon
chr11:106326674-106326808
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTCACGGCTGGCCCCTGCAGCTT
3' ss Score
6
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
GTGGTGTTCGAGGCAGTGGCCGCCGGCGTGGAGCACTCCTACGTGGCACTGGACGACCTGCTCCTCCAGGATGGGCCCTGCCCCCTGCCAG
Seq A exon
CTTCCTGTGACTTCGAGGCTGGTCTTTGTGGCTGGAACCATGTGCCCCGGCCCGGCCTGGGCGGGTACAGCTGGGACTGGAGCAGCGGAGCCTCGCCCTCCCGCTACCCGCAGCCCCCCGTGGACCACACCCTGGGCACAGAGGCAG
Seq C2 exon
GCCACTTCGCCCTCTTCGAGACCAGCGTGCTGGGCCCAGGGGGCCGAGCGGCCGGGCTCATCAGCCAGCCTCTGCCCCCCACCACGGCCTCTTGTCTGCGCTTCTGGTACCACATGGGCTTCCCCGAGCACTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021550-'25-23,'25-22,26-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.180 C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(18.3=90.3)
A:
PF0062918=MAM=PU(28.3=94.0)
C2:
PF0062918=MAM=FE(27.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGTTCGAGGCAGTGG
R:
AGAAGTGCTCGGGGAAGCC
Band lengths:
226-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development