MmuEX0027599 @ mm10
Exon Skipping
Gene
ENSMUSG00000026941 | Mamdc4
Description
MAM domain containing 4 [Source:MGI Symbol;Acc:MGI:2685841]
Coordinates
chr2:25564576-25565186:-
Coord C1 exon
chr2:25565096-25565186
Coord A exon
chr2:25564825-25564971
Coord C2 exon
chr2:25564576-25564710
Length
147 bp
Sequences
Splice sites
3' ss Seq
CACCTGCCAGTTCCTTGCAGGTT
3' ss Score
4.23
5' ss Seq
CAGGTGTGC
5' ss Score
6.46
Exon sequences
Seq C1 exon
GTGGTGTTTGAGGCTGTGGCTGCTGGTGTAGAATATTCCTACATGGCTCTAGATGACATTTCCCTCCAAGATGGGCCCTGTCCTCAGCCAG
Seq A exon
GTTCCTGTGACTTTGAAACTGGCCTGTGTGGGTGGAGCCACCTGCCCTGGCCCAGCCTGGGCGGGTACAGCTGGGACTGGAGTAGTGGAGCCACCCCATCCCGCTACCCCCAGCCTTCAGTGGACCATACCCTGGGCACAGAAGCAG
Seq C2 exon
GCCATTTTGCTTTCTTTGAAACCAGCGTGCTAGGTCCTGGGGGCCAGGCAGCCTGGCTGCGCAGTGAGCCACTGCCAGCAACAACAGTCTCATGCCTCCGCTTCTGGTACTACATGGGCTTTCCTGAGCATTTCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026941_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.080 C2=0.000
Domain overlap (PFAM):
C1:
PF0062918=MAM=PD(17.8=90.3)
A:
PF0062918=MAM=PU(28.3=94.0)
C2:
PF0062918=MAM=FE(27.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGTGTTTGAGGCTGTGGC
R:
AGAAATGCTCAGGAAAGCCCA
Band lengths:
226-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types