RnoEX6017106 @ rn6
Exon Skipping
Gene
ENSRNOG00000004966 | Slc38a11
Description
solute carrier family 38, member 11 [Source:RGD Symbol;Acc:1306005]
Coordinates
chr3:51409132-51414139:-
Coord C1 exon
chr3:51414065-51414139
Coord A exon
chr3:51410852-51410986
Coord C2 exon
chr3:51409132-51409197
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGTTTCACTACAGACT
3' ss Score
8.58
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GATTGCCCTATTCAATGAAGCAAGCCGGATTTCCCTTGGGAATACTGCTTTTATTCTGGGTCTCATACATCACAG
Seq A exon
ACTTTTCCCTAGTTTTATTGATAAAAGGCGGAGCCCTCTCTGGAACAGACTCCTACCAGTCTTTGGTTAACAAGACCTTTGGCTTTCCAGGGTACTTGCTGCTCTCTACCCTACAGTTTATGTACCCTTTTATAG
Seq C2 exon
CTATGATAAGTTACAACATAATAACTGGAGATACTTTGAGCAAAGTTTTTCAAAGACTCCCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004966-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(26.0=100)
A:
PF0149013=Aa_trans=FE(46.9=100)
C2:
PF0149013=Aa_trans=FE(18.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTATTCAATGAAGCAAGC
R:
CTCCCGGGAGTCTTTGAAAAACT
Band lengths:
138-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]