GgaEX0016575 @ galGal3
Exon Skipping
Gene
ENSGALG00000011052 | SLC38A11
Description
NA
Coordinates
chr7:21483421-21486144:+
Coord C1 exon
chr7:21483421-21483495
Coord A exon
chr7:21484626-21484760
Coord C2 exon
chr7:21486079-21486144
Length
135 bp
Sequences
Splice sites
3' ss Seq
GAAATTTTATATTTTAACAGATT
3' ss Score
6.94
5' ss Seq
TTGGTAAGA
5' ss Score
8.85
Exon sequences
Seq C1 exon
GACTGCCCTATTCAATGAAAGAAGCTGGTTTTCCTTTAGGAGTACTGCTTCTGTTTGGGGTTGCCTATATCACAG
Seq A exon
ATTATTCCATTATATTACTGATCAAAGGAGGAAATCTCTCCAGTACCAACACCTATCAAGAGCTGGTCAGAAAAACATATGGCTTTTTAGGTTATCTAATACTTTCAACTCTTCAGTTTTTATATCCATTTATTG
Seq C2 exon
CTATGATTAGTTACAACATAATAACTGGAGACACTTTAACTAAAGTGTTCCTGAGAATTCCTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011052-'1-3,'1-2,2-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(6.4=100)
A:
PF0149013=Aa_trans=FE(11.6=100)
C2:
PF0149013=Aa_trans=FE(5.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGCCCTATTCAATGAAAGAAGCT
R:
TCCAGGAATTCTCAGGAACACT
Band lengths:
139-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]