MmuEX6101674 @ mm10
Exon Skipping
Gene
ENSMUSG00000061171 | Slc38a11
Description
solute carrier family 38, member 11 [Source:MGI Symbol;Acc:MGI:2443383]
Coordinates
chr2:65355324-65361401:-
Coord C1 exon
chr2:65361327-65361401
Coord A exon
chr2:65358054-65358188
Coord C2 exon
chr2:65355324-65355389
Length
135 bp
Sequences
Splice sites
3' ss Seq
TTTGTTTTGTTTCACTACAGACT
3' ss Score
8.58
5' ss Seq
TAGGTAAGA
5' ss Score
9.14
Exon sequences
Seq C1 exon
GATTGCCTTATTCAATGAAGCAAGCTGGATTTCCCTTGGGAATACTGCTTTTATTCTTGGTCTCATACATCACAG
Seq A exon
ACTTCTCCCTAGTTTTATTGATAAAAGGAGGAGCCCTCTCTGGAACAGACTCCTACCAGTCTTTGGTTAACAAGACCTTTGGCTTTCCCGGGTACCTGCTGCTCTCTACCCTACAGTTTATGTACCCTTTCATAG
Seq C2 exon
CTATGATAAGTTACAACATAATAACTGGAGATACTTTGAGCAAAGTTTTTCAAAGACTCCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000061171-'4-6,'4-5,5-6=AN
Average complexity
A_C1
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=PU(7.0=96.0)
A:
PF0149013=Aa_trans=PU(12.9=97.8)
C2:
PF0149013=Aa_trans=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCTTATTCAATGAAGCAAGCTG
R:
CTCCTGGGAGTCTTTGAAAAACT
Band lengths:
138-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types