BtaEX0033183 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007650 | SLC38A11
Description
Bos taurus solute carrier family 38, member 11 (SLC38A11), mRNA. [Source:RefSeq mRNA;Acc:NM_001031760]
Coordinates
chr2:31394905-31406223:+
Coord C1 exon
chr2:31394905-31394979
Coord A exon
chr2:31401157-31401291
Coord C2 exon
chr2:31406144-31406223
Length
135 bp
Sequences
Splice sites
3' ss Seq
AATGGTTATTTTTGCCACAGATT
3' ss Score
7.87
5' ss Seq
TTGGTAAGG
5' ss Score
8.92
Exon sequences
Seq C1 exon
GATTGCCTTATTCAATGAAGCAAGCTGGCTTTCCTCTGGGAATATTGCTTTTATTCTGGGTTTCATATGTTACAG
Seq A exon
ATTTTTCCCTCATTTTATTGATAAAAGGAGCTGCCCTTTCTGGAACAGACACTTACCAGTCTTTGGTCAATAGAACTTTTGGCTTTCCAGGATATCTCTTACTCTCTGTTCTGCAATTTTTGTATCCTTTCATTG
Seq C2 exon
ATCTCTCTTATTTCTACAGTTTTAACAACTCTGATTCTTGGAATTGTAGTGGCAAGGGGAGTTTCACTGGGCCCACACAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007650_MULTIEX1-4/6=2-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(48.1=100)
A:
PF0149013=Aa_trans=FE(11.5=100)
C2:
PF0149013=Aa_trans=FE(6.7=100)
Main Skipping Isoform:
ENSBTAT00000010065fB6487
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGCCTTATTCAATGAAGCAAGCT
R:
ATGTGTGGGCCCAGTGAAAC
Band lengths:
154-289
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development