DreEX6038651 @ danRer10
Exon Skipping
Gene
ENSDARG00000040257 | slc38a11
Description
solute carrier family 38, member 11 [Source:ZFIN;Acc:ZDB-GENE-050417-122]
Coordinates
chr9:50322484-50323125:+
Coord C1 exon
chr9:50322484-50322558
Coord A exon
chr9:50322840-50322974
Coord C2 exon
chr9:50323060-50323125
Length
135 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTGGTCTTTTACCAGATT
3' ss Score
8.31
5' ss Seq
TTGGTAATT
5' ss Score
5.73
Exon sequences
Seq C1 exon
GTTTACCATATTCCATGAGTCAGGCCGGACTGCCAATGGGTCTTCTGCTGCTTATTCTGGTTGCCTTCATTACAG
Seq A exon
ATTACTCCATCATTCTTCTGGTCAGAGGAGGAAATCTGTCCGGCACCCACAGTTACCAATCTCTGGTTCGAAGCACATTTGGCCAGATAGGTTACATCATCGTGTCGGTTCTACAGTTTCTTTATCCATTCATTG
Seq C2 exon
CAATGATCAGCTACAACATCATCGCAGGAGATACACTTACTAAAGTATTCATGAGAATTCCAGGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040257-'6-8,'6-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0149013=Aa_trans=FE(22.1=100)
A:
PF0149013=Aa_trans=FE(11.5=100)
C2:
PF0149013=Aa_trans=PD(17.7=87.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACCATATTCCATGAGTCAGGCC
R:
CACCTGGAATTCTCATGAATACTTT
Band lengths:
138-273
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]