RnoEX6017116 @ rn6
Exon Skipping
Gene
ENSRNOG00000005007 | Scn3a
Description
sodium voltage-gated channel alpha subunit 3 [Source:RGD Symbol;Acc:3635]
Coordinates
chr3:51605250-51612447:-
Coord C1 exon
chr3:51612134-51612447
Coord A exon
chr3:51606636-51606754
Coord C2 exon
chr3:51605250-51605339
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCTTGTATTTTCTTTTTCAGACT
3' ss Score
11.12
5' ss Seq
CTCATATCC
5' ss Score
-13.36
Exon sequences
Seq C1 exon
GCAATTCTTATGCAAGAAGCTAAACGTAATTAAATGTGCAGGATGAAAAGATGGCCCAGGCACTGCTGGTACCCCCGGGACCTGAGAGCTTCCGCCTTTTCACTCGAGAATCTCTTGCTGCTATCGAAAAGCGTGCTGCAGAAGAGAAAGCCAAGAAACCCAAGAAAGAGCAAGACATTGACGATGAGAACAAACCAAAGCCAAACAGCGACTTGGAAGCTGGGAAGAACCTTCCATTTATCTATGGAGACATTCCTCCAGAGATGGTGTCGGAGCCCCTGGAGGACCTGGACCCCTACTATGTCAGTAAGAAA
Seq A exon
ACTTTTGTAGTGTTGAATAAAGGGAAGGCGATTTTTCGATTCAGCGCCACCTCCGCCCTGTATATTTTAACTCCGCTAAACCCTGTTAGGAAAATTGCCATTAAGATTTTGGTACACTC
Seq C2 exon
TTTGTTCAGCATGCTTATCATGTGCACTATTTTGACCAACTGTGTATTTATGACGTTGAGTAATCCTCCCGACTGGACAAAGAATGTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005007-'6-6,'6-5,7-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.330 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.7=6.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGAAACCCAAGAAAGAGC
R:
ACATTCTTTGTCCAGTCGGGA
Band lengths:
252-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]