GgaEX7006025 @ galGal4
Exon Skipping
Gene
ENSGALG00000011040 | SCN3A
Description
sodium channel, voltage gated, type III alpha subunit [Source:HGNC Symbol;Acc:HGNC:10590]
Coordinates
chr7:19411316-19414489:+
Coord C1 exon
chr7:19411316-19411582
Coord A exon
chr7:19413379-19413499
Coord C2 exon
chr7:19414402-19414489
Length
121 bp
Sequences
Splice sites
3' ss Seq
GTATAATTTTTGTTTTGCAGACT
3' ss Score
8.85
5' ss Seq
CATATCCTT
5' ss Score
-20.06
Exon sequences
Seq C1 exon
ATGGCACAGGCACTGCTGGTACCGCCAGGACCTGAAAGCTTCCGCTATTTTACTAGAGATTCTCTCGCAGCTATTGAAAAGCGTTCTGCAGAAGAAAAAGCTAAAAAGCCCAAGCAAGAACATACTGATGATGATGATGAAAATGGTCCAAAACCAAACAGTGACTTGGAGGCAGGAAAGACACTGCCATTTATTTATGGTGACATACCTCCAGGAATGGTTTCTGAACCTTTGGAAGACCTGGACCCATATTATATCAATAAAAAA
Seq A exon
ACTTTCATAGTATTGAATAAGGGAAAGGCAATTTTCCGATTCAGTGCCACATCTGCCTTGTATATTTTAACTCCTTTTAATCCCATCAGAAAAATTGCTATCAAGATTTTGGTACATTCAT
Seq C2 exon
TATTCAGCATGCTTATCATGTGCACTATTTTGACAAACTGTGTATTTATGACCATGAGTAACCCTCCAGACTGGACAAAGAATGTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011040-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.348 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.7=6.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCGCAGCTATTGAAAAGCGT
R:
ACACAGTTTGTCAAAATAGTGCACA
Band lengths:
248-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]