DreEX0064547 @ danRer10
Exon Skipping
Gene
ENSDARG00000018032 | scn8ab
Description
sodium channel, voltage gated, type VIII, alpha subunit b [Source:ZFIN;Acc:ZDB-GENE-060906-2]
Coordinates
chr6:39461795-39477824:-
Coord C1 exon
chr6:39477487-39477824
Coord A exon
chr6:39462272-39462392
Coord C2 exon
chr6:39461795-39461882
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTCTTCTTTTTTCTCCCCAGACC
3' ss Score
12.69
5' ss Seq
CATATCCTT
5' ss Score
-20.06
Exon sequences
Seq C1 exon
CGCTTGCTGTCCTGAATGGCTTCTAAATAAAGAGGACTCTGCTGCAGGATGACAATATGGCTGCGCCGCTGCTCGCACCTCCAGGCCCCGACAGCTTCAAGAGGTTCACCCCTGAATCTTTGGCCAACATCGAGAAGCGCATCGCTGAGGAGAAGAAGAAGAAGCCTGTTAAACCCAGATCTGACAGCAGTCACCGCGATGACGATGATGACAACAAACCCAAGCCCAACAGTGACCTGGAAGCGGGGAAGGGCGTGCCCTTTATTTATGGGGACGTCCCGTCTAATATGTTGGCCGTGCCCCTGGAAGACCTGGACCCCTTCTATTTGAACAAGAAA
Seq A exon
ACCTTTATAGTGCTTAACAAAGGAAAAACAATCTTCCGTTTCAGTGCCACGCCCTCATTATATATCATTAGTCCTTTTAACCTGTTCAGGCAAATAGCAATTAAAATTTTGATACACTCAT
Seq C2 exon
TTTTCAGCATGATCATCATGTGTACAATTTTGACAAATTGTGTCTTCATGACATTCAGCAATCCTCCAGAATGGTCCAAACAAGTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000018032-'5-3,'5-2,6-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.8=6.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACCCAGATCTGACAGCAGTC
R:
TGGACCATTCTGGAGGATTGC
Band lengths:
245-366
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]