GgaEX7011848 @ galGal4
Exon Skipping
Gene
ENSGALG00000006060 | SCN8A
Description
sodium channel, voltage gated, type VIII alpha subunit [Source:HGNC Symbol;Acc:HGNC:10596]
Coordinates
chrLGE22C19W28_E50C23:107202-115740:-
Coord C1 exon
chrLGE22C19W28_E50C23:115411-115740
Coord A exon
chrLGE22C19W28_E50C23:108509-108627
Coord C2 exon
chrLGE22C19W28_E50C23:107202-107291
Length
119 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTCTTTCTCTACAGACC
3' ss Score
13.53
5' ss Seq
TTCATATCC
5' ss Score
-14.87
Exon sequences
Seq C1 exon
AGCTGACCTGTCCGGGCTGCAACATCACTAAAGAAGCTGCTGCAGGATGAAAAGATGGCAGCACGGCTGCTCGCACCACCAGGCCCTGATAGTTTTAAACCTTTCACTCCGGAGTCTCTGGCTAACATTGAGAAACGCATTGCAGAAGAAAAAAAGAAGAAGCGTCCAAAGCAAGACAGCAGCCATCGCGACGACGATGAAGACAGCAAACCAAAACCAAACAGTGACCTTGAGGCGGGGAAGAATTTGCCTTTCATCTATGGGGACATCCCTAAAGGCCTGGTTGCTGTACCACTGGAGGACTTTGACCCTTATTATATGACCCAGAAA
Seq A exon
ACCTTTGTAGTACTAAACAGAGGGAAAACACTCTTCCGATTTAGTGCCACACCTGCCTTGTACATTTTAAGTCCTTTTAATCTGTTTAGAAGAATAGCTATTAAAATTTTGATACATTC
Seq C2 exon
AGTATTTAGCATGATCATTATGTGCACTATTTTGACCAACTGTGTATTCATGACTTTTAGTAACCCACCTGAATGGTCGAAGAATGTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006060-'3-4,'3-1,4-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.489 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.8=6.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CTCACTCGCCCTGCAAACAC
R:
GCCATCATGATCACACTGAAATCT
Band lengths:
210-329
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]