DreEX6081059 @ danRer10
Exon Skipping
Gene
ENSDARG00000005775 | scn8aa
Description
sodium channel, voltage gated, type VIII, alpha subunit a [Source:ZFIN;Acc:ZDB-GENE-000828-1]
Coordinates
chr23:27388480-27409842:-
Coord C1 exon
chr23:27409511-27409842
Coord A exon
chr23:27391555-27391673
Coord C2 exon
chr23:27388480-27388569
Length
119 bp
Sequences
Splice sites
3' ss Seq
TCTCTTTTCTCTCTCCACAGACA
3' ss Score
13.75
5' ss Seq
TTCATATCC
5' ss Score
-14.87
Exon sequences
Seq C1 exon
AACTGGCTGCCGTGGAGGGTACATAACAGGAGAAGAAGTTGCTGCAGGATGAAAACATGGCTGCACCCCTTCTTGCACCGCCAGGACCTAACAGCTACAAATACTTTACCAGGGAATCACTCCGTGAAATCGAGAAGCGTATCGAGGAGGAGAAAGCCAAGCCGCCACCTAAGCCAGACAACAGCTATCGCGATGATGACGACGAGAACAAGCCCAAACCTAACGGTGACCTGGAGGCGGGCAAGAGTCTGCCCTTCATCTACGGGGACATCCCTCCTGGCATGGTGGCAACACCACTGGAGGATTTCGATCCCTTCTACATAAATCAGAAA
Seq A exon
ACATTTGTAGTCCTAAATAAAGGGAAAACAATCTTCCGCTTTAGTGCCACACCTGCCTTGTACATGATAAGCCCTTTTAATCTTGCTAGACGAATAGCGATTAAAATTTTGATACATTC
Seq C2 exon
AGTATTCAGCATGTTCATTATGTGTACGATTTTGACCAACTGTGTGTTCATGACTTTTAGTAATCCTCCCGAGTGGTCCAAACAAGTAGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000005775-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.424 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=PU(0.8=6.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGCCAGACAACAGCTATCGC
R:
TGGACCACTCGGGAGGATTAC
Band lengths:
242-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]