GgaEX6046895 @ galGal3
Exon Skipping
Gene
ENSGALG00000006060 | SCN8A
Description
NA
Coordinates
chrE22C19W28_E50C23:81504-90379:-
Coord C1 exon
chrE22C19W28_E50C23:90050-90379
Coord A exon
chrE22C19W28_E50C23:83146-83266
Coord C2 exon
chrE22C19W28_E50C23:81504-81632
Length
121 bp
Sequences
Splice sites
3' ss Seq
CTTTCTTTCTTTCTCTACAGACC
3' ss Score
13.53
5' ss Seq
CATATCCTT
5' ss Score
-20.06
Exon sequences
Seq C1 exon
AGCTGACCTGTCCGGGCTGCAACATCACTAAAGAAGCTGCTGCAGGATGAAAAGATGGCAGCACGGCTGCTCGCACCACCAGGCCCTGATAGTTTTAAACCTTTCACTCCGGAGTCTCTGGCTAACATTGAGAAACGCATTGCAGAAGAAAAAAAGAAGAAGCGTCCAAAGCAAGACAGCAGCCATCGCGACGACGATGAAGACAGCAAACCAAAACCAAACAGTGACCTTGAGGCGGGGAAGAATTTGCCTTTCATCTATGGGGACATCCCTAAAGGCCTGGTTGCTGTACCACTGGAGGACTTTGACCCTTATTATATGACCCAGAAA
Seq A exon
ACCTTTGTAGTACTAAACAGAGGGAAAACACTCTTCCGATTTAGTGCCACACCTGCCTTGTACATTTTAAGTCCTTTTAATCTGTTTAGAAGAATAGCTATTAAAATTTTGATACATTCAT
Seq C2 exon
GTATACATTCACTGGTATTTATACATTTGAATCACTTGTGAAAATTATTGCAAGAGGTTTCTGTATAGATGGCTTTACTTTCCTACGAGACCCATGGAACTGGCTAGATTTCAGTGTGATCATGATGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006060-'2-4,'2-2,3-4=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.489 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0052026=Ion_trans=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGACGACGATGAAGACAGCAA
R:
TAGCCAGTTCCATGGGTCTCG
Band lengths:
248-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]