GgaEX6046896 @ galGal3
Exon Skipping
Gene
ENSGALG00000006060 | SCN8A
Description
NA
Coordinates
chrE22C19W28_E50C23:81504-90379:-
Coord C1 exon
chrE22C19W28_E50C23:90050-90379
Coord A exon
chrE22C19W28_E50C23:81841-81928
Coord C2 exon
chrE22C19W28_E50C23:81504-81632
Length
88 bp
Sequences
Splice sites
3' ss Seq
TCCTTGACTTTGTTCCACAGTAT
3' ss Score
8
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
AGCTGACCTGTCCGGGCTGCAACATCACTAAAGAAGCTGCTGCAGGATGAAAAGATGGCAGCACGGCTGCTCGCACCACCAGGCCCTGATAGTTTTAAACCTTTCACTCCGGAGTCTCTGGCTAACATTGAGAAACGCATTGCAGAAGAAAAAAAGAAGAAGCGTCCAAAGCAAGACAGCAGCCATCGCGACGACGATGAAGACAGCAAACCAAAACCAAACAGTGACCTTGAGGCGGGGAAGAATTTGCCTTTCATCTATGGGGACATCCCTAAAGGCCTGGTTGCTGTACCACTGGAGGACTTTGACCCTTATTATATGACCCAGAAA
Seq A exon
TATTTAGCATGATCATTATGTGCACTATTTTGACCAACTGTGTATTCATGACTTTTAGTAACCCACCTGAATGGTCGAAGAATGTGGA
Seq C2 exon
GTATACATTCACTGGTATTTATACATTTGAATCACTTGTGAAAATTATTGCAAGAGGTTTCTGTATAGATGGCTTTACTTTCCTACGAGACCCATGGAACTGGCTAGATTTCAGTGTGATCATGATGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006060-'2-4,'2-3,4-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.489 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(0.8=6.7)
C2:
PF0052026=Ion_trans=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCCTAAAGGCCTGGTTGC
R:
TAGCCAGTTCCATGGGTCTCG
Band lengths:
170-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]