RnoEX6034140 @ rn6
Exon Skipping
Gene
ENSRNOG00000005309 | Scn8a
Description
sodium voltage-gated channel alpha subunit 8 [Source:RGD Symbol;Acc:3638]
Coordinates
chr7:142594430-142596280:+
Coord C1 exon
chr7:142594430-142594548
Coord A exon
chr7:142595604-142595693
Coord C2 exon
chr7:142596152-142596280
Length
90 bp
Sequences
Splice sites
3' ss Seq
TCCCCTTAACTCCGATCTACAGT
3' ss Score
-2.15
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
ACCTTTGTAGTATTAAACAGAGGGAAAACTCTCTTCAGATTTAGTGCCACACCTGCCTTGTACATTTTAAGCCCTTTTAACCTGATAAGAAGAATAGCTATTAAAATTTTGATACACTC
Seq A exon
AGTTTTCAGCATGATCATCATGTGCACCATCCTGACCAACTGTGTGTTCATGACCTTTAGTAACCCTCCAGAATGGTCCAAGAATGTGGA
Seq C2 exon
GTACACATTCACAGGGATTTACACATTTGAATCACTAGTGAAAATCATCGCAAGAGGTTTCTGCATAGACGGCTTCACCTTCTTACGAGACCCGTGGAACTGGTTAGACTTCAGTGTCATCATGATGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005309-'7-8,'7-6,9-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(0.8=6.5)
C2:
PF0052026=Ion_trans=FE(17.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACACCTGCCTTGTACATT
R:
TCTAACCAGTTCCACGGGTCT
Band lengths:
182-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]