GgaEX7011849 @ galGal4
Exon Skipping
Gene
ENSGALG00000006060 | SCN8A
Description
sodium channel, voltage gated, type VIII alpha subunit [Source:HGNC Symbol;Acc:HGNC:10596]
Coordinates
chrLGE22C19W28_E50C23:106865-108627:-
Coord C1 exon
chrLGE22C19W28_E50C23:108509-108627
Coord A exon
chrLGE22C19W28_E50C23:107202-107291
Coord C2 exon
chrLGE22C19W28_E50C23:106865-106993
Length
90 bp
Sequences
Splice sites
3' ss Seq
GATCCTTGACTTTGTTCCACAGT
3' ss Score
-2.23
5' ss Seq
GGAGTAAGT
5' ss Score
8.57
Exon sequences
Seq C1 exon
ACCTTTGTAGTACTAAACAGAGGGAAAACACTCTTCCGATTTAGTGCCACACCTGCCTTGTACATTTTAAGTCCTTTTAATCTGTTTAGAAGAATAGCTATTAAAATTTTGATACATTC
Seq A exon
AGTATTTAGCATGATCATTATGTGCACTATTTTGACCAACTGTGTATTCATGACTTTTAGTAACCCACCTGAATGGTCGAAGAATGTGGA
Seq C2 exon
GTATACATTCACTGGTATTTATACATTTGAATCACTTGTGAAAATTATTGCAAGAGGTTTCTGTATAGATGGCTTTACTTTCCTACGAGACCCATGGAACTGGCTAGATTTCAGTGTGATCATGATGGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006060-'4-4,'4-2,5-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0052026=Ion_trans=PU(0.8=6.5)
C2:
PF0052026=Ion_trans=FE(17.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACACCTGCCTTGTACATT
R:
TAGCCAGTTCCATGGGTCTCG
Band lengths:
180-270
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]