RnoEX6020201 @ rn6
Exon Skipping
Gene
ENSRNOG00000012750 | Pabpc1l
Description
poly(A) binding protein, cytoplasmic 1-like [Source:RGD Symbol;Acc:1563142]
Coordinates
chr3:160412789-160419556:+
Coord C1 exon
chr3:160412789-160412982
Coord A exon
chr3:160416830-160416945
Coord C2 exon
chr3:160419417-160419556
Length
116 bp
Sequences
Splice sites
3' ss Seq
CCTTCCTCCCTGTGACCCAGGTG
3' ss Score
8.12
5' ss Seq
AGTGTGAGT
5' ss Score
6.96
Exon sequences
Seq C1 exon
CGGAGCGGGCACTGGACACGATGAACTTTGAGATGATCAAAGGCCAGCCCATCCGAATCATGTGGTCCCACAGAGACCCAGGCCTTCGAAGGTCCGGTATGGGCAACATCTTTATCAAAAACTTGGAGAATTCCATTGACAACAAGGCTCTGTATGACACCTTCTCCACCTTTGGGAGCATCCTGTCTTCTAAG
Seq A exon
GTGGTATACAATGAGCATGGATCACGGGGTTTCGGCTTTGTGCATTTTGAGACCCACGAGGCTGCCCAGAAGGCCATCAACACCATGAATGGGATGTTGCTGAATGACCGGAAAGT
Seq C2 exon
TTTCGTAGGTCACTTCAAGTCTCGCCAGAAGCGGGAGGCAGAGCTGGGGGCTCGGGCCCTAGGATTCACCAACATCTATGTGAAGAACCTGCGCGTGGACATGGATGAGCAGGGCCTCCAGGACCTCTTCTCCCAGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012750-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(25.4=27.7),PF0007617=RRM_1=PU(40.6=43.1)
A:
PF0007617=RRM_1=FE(55.1=100)
C2:
PF0007617=RRM_1=PD(1.4=2.1),PF0007617=RRM_1=PU(31.4=45.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCCGAATCATGTGGTCCC
R:
ACGCGCAGGTTCTTCACATAG
Band lengths:
242-358
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]