GgaEX6022851 @ galGal3
Exon Skipping
Gene
ENSGALG00000004123 | PABPC1L
Description
NA
Coordinates
chr20:5202393-5204275:-
Coord C1 exon
chr20:5204082-5204275
Coord A exon
chr20:5203119-5203234
Coord C2 exon
chr20:5202393-5202532
Length
116 bp
Sequences
Splice sites
3' ss Seq
CTCCTGCTCTGCTTTTGTAGGTG
3' ss Score
10.72
5' ss Seq
GGTGTAAGT
5' ss Score
8.07
Exon sequences
Seq C1 exon
CTGAGCGAGCCCTGGACACCATGAACTTTGAAGTGATCAAGGGCCGACCTGTCCGAATCATGTGGTCCCAGCGAGACCCTGGGCTCAGGAAGTCAGGGGTTGGAAACGTCTTTATCAAGAACCTGGATGACTCCATTGACAATAAAGCCCTGTACGACACATTCTCAGCCTTTGGGAACATCCTGTCCTGCAAG
Seq A exon
GTGGTCTGTGATGAAAATGGATCCCGTGGCCATGGCTTTGTTCATTTTGAGACTCAAGAGGCAGCAACTCGGGCCATCCAGACCATGAATGGGATGCTCCTCAATGACCGCAAGGT
Seq C2 exon
GTTTGTTGGCCACTTTAAATCCCGCAAAGAGCGCGAGGCAGAGTTTGGGGCCAGGGCAATGGAGTTCACCAACGTCTACATCAAAAACTTCGGGGATGACATGGATGATAACAGACTGCGGGAAATATTCTCCAGGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004123-'1-2,'1-1,2-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.026 C2=0.000
Domain overlap (PFAM):
C1:
PF0007617=RRM_1=PD(25.4=27.7),PF0007617=RRM_1=PU(40.6=43.1)
A:
PF0007617=RRM_1=FE(55.1=100)
C2:
PF0007617=RRM_1=PD(1.4=2.1),PF0007617=RRM_1=PU(31.4=45.8),PF073187=DUF1464=PU(9.0=18.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTGGACACCATGAACTTT
R:
TTGGTGAACTCCATTGCCCTG
Band lengths:
258-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]