RnoEX6030440 @ rn6
Exon Skipping
Gene
ENSRNOG00000032429 | Tmprss9
Description
transmembrane serine protease 9 [Source:RGD Symbol;Acc:1309581]
Coordinates
chr7:11693346-11695848:-
Coord C1 exon
chr7:11695781-11695848
Coord A exon
chr7:11695479-11695654
Coord C2 exon
chr7:11693346-11693387
Length
176 bp
Sequences
Splice sites
3' ss Seq
CCTCTCTCTCCTGTTCACAGAGA
3' ss Score
10.2
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TTCGTGAGGAGTTTCCAGAAAACAGAGTTAGAATCGAGCTGCACGGGCTGCACAGTGCTGAGTTACAG
Seq A exon
AGATGGCAATTCCAGCGTGATTGTGCATTTCCGGCTACACTTTCTGCTCCGAGCCCTCCAGCCACTGAGCCTGGACCAGGAAGCAGACATCTTGCAGAAAGGAATCCAGGCAAGGTTACAAGGACAAGGTCTTTCCCTGGCTGCCTACGGCACCATCACATCCGTGGAGCTGACAG
Seq C2 exon
GAAGGTGTGAAGGTCCGGTGACCGAGAGGGACTTAAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000032429-'3-5,'3-2,4-5=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=FE(22.2=100)
A:
PF0139015=SEA=PD(37.4=61.7)
C2:
PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGTGAGGAGTTTCCAGAAAAC
R:
TGACTTTAAGTCCCTCTCGGTCA
Band lengths:
108-284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]