BtaEX0037184 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000718 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr7:22480908-22482148:-
Coord C1 exon
chr7:22482081-22482148
Coord A exon
chr7:22481797-22481972
Coord C2 exon
chr7:22480908-22480949
Length
176 bp
Sequences
Splice sites
3' ss Seq
GCCAATGTCCTCCCCACCAGGGA
3' ss Score
8.06
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTTGTCAGCAGCTTTCAAGAGACAGAGTTGGAGTCCAGCTGCCTGGGCTGCACGGTGCTGAGTTACTG
Seq A exon
GGAGGGCAACGCCAGCGTCCTGGTGCGTTTCCGGCTGCACTTTCTGCTGCTGGCCCTGTGGACGCCAAGCCCAGGCCTGGAGGAGCAGCTATTGCAGCGGGGACTTCATGCGAGGCTGCAGGGCCTCGGCATCCCCCTAGCCCCCTATGGCACCATTGTGTCTGCCCAGCTCACAG
Seq C2 exon
GAAGCCAGAAGGGGCCGCTGACAGAAAGAGACTTAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000718-'3-5,'3-4,4-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.133
Domain overlap (PFAM):
C1:
PF0139015=SEA=FE(28.2=100)
A:
PF0139015=SEA=PD(20.5=26.7)
C2:
PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCAGCAGCTTTCAAGAGACA
R:
GATTTTAAGTCTCTTTCTGTCAGCGG
Band lengths:
106-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development