MmuEX6049984 @ mm10
Exon Skipping
Gene
ENSMUSG00000059406 | Tmprss9
Description
transmembrane protease, serine 9 [Source:MGI Symbol;Acc:MGI:3612246]
Coordinates
chr10:80883719-80885189:+
Coord C1 exon
chr10:80883719-80883786
Coord A exon
chr10:80883943-80884118
Coord C2 exon
chr10:80885148-80885189
Length
176 bp
Sequences
Splice sites
3' ss Seq
CCCTCCCCTCTTGCATGTAGGGA
3' ss Score
8
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
TTTGTGAGTAGTTTCCAGAAAACAGAGTTAGAGTCGAGCTGCGCAGGCTGCACCGTGCTTAGTTACAG
Seq A exon
GGATGGCAATTCCACTGTGATTGTACATTTCCGGCTACACTTTCTGCTCCGAGCCCTCCAGCCCCTGAGCCTGAAGCAGGAAGCAGACATCTTGCAGAAAGGAATCCAGGCAAGGCTGCAGGAACAAGGTCTTTCCCTGGCTGCCTATGGCACCATCGTGTCAGTCGAGCTGACAG
Seq C2 exon
GAAGGTGTGAAGGTCCGGTGACTGAGAGGGACTTAAAGTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059406-'1-20,'1-9,4-20=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=FE(23.7=100)
A:
PF0139015=SEA=PD(40.9=63.3)
C2:
PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTTCCAGAAAACAGAGTTAGAGTCG
R:
GACTTTAAGTCCCTCTCAGTCACC
Band lengths:
98-274
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types