HsaEX6091730 @ hg38
Exon Skipping
Gene
ENSG00000178297 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:HGNC:30079]
Coordinates
chr19:2398795-2402016:+
Coord C1 exon
chr19:2398795-2398862
Coord A exon
chr19:2399079-2399193
Coord C2 exon
chr19:2401975-2402016
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTGCGACCCCTCCAGACG
3' ss Score
6.09
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTTGTAAGTAGTTTTCAGAAGACAGAGTTAGAGGCAAGCTGCGTGGGTTGCTCGGTACTGAATTATAG
Seq A exon
ACGCTGAGCCTGGGCCTGGAGGAGGAGCTATTGCAGCGAGGGATCCGGGCAAGGCTGCGGGAGCACGGCATCTCCCTGGCTGCCTATGGCACAATTGTGTCGGCTGAGCTCACAG
Seq C2 exon
GGAGACATAAGGGACCCTTGGCAGAAAGAGACTTCAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178297-'8-8,'8-7,9-8
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.200
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAAGTAGTTTTCAGAAGACAGAGT
R:
GATTTGAAGTCTCTTTCTGCCAAGG
Band lengths:
106-221
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains