HsaEX6091730 @ hg19
Exon Skipping
Gene
ENSG00000178297 | TMPRSS9
Description
transmembrane protease, serine 9 [Source:HGNC Symbol;Acc:30079]
Coordinates
chr19:2398793-2402014:+
Coord C1 exon
chr19:2398793-2398860
Coord A exon
chr19:2399016-2399191
Coord C2 exon
chr19:2401973-2402014
Length
176 bp
Sequences
Splice sites
3' ss Seq
CCTCTCCTCCATACCTGTAGGGA
3' ss Score
8.9
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TTTGTAAGTAGTTTTCAGAAGACAGAGTTAGAGGCAAGCTGCGTGGGTTGCTCGGTACTGAATTATAG
Seq A exon
GGATGGGAACTCCAGTGTCCTCGTACATTTCCAGCTGCACTTTCTGCTGCGACCCCTCCAGACGCTGAGCCTGGGCCTGGAGGAGGAGCTATTGCAGCGAGGGATCCGGGCAAGGCTGCGGGAGCACGGCATCTCCCTGGCTGCCTATGGCACAATTGTGTCGGCTGAGCTCACAG
Seq C2 exon
GGAGACATAAGGGACCCTTGGCAGAAAGAGACTTCAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000178297-'2-4,'2-2,3-4=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.133
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTAAGTAGTTTTCAGAAGACAGAGT
R:
GATTTGAAGTCTCTTTCTGCCAAGG
Band lengths:
106-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)