DreEX0080018 @ danRer10
Exon Skipping
Gene
ENSDARG00000029841 | tmprss9
Description
transmembrane protease, serine 9 [Source:ZFIN;Acc:ZDB-GENE-050208-573]
Coordinates
chr22:10729859-10730683:+
Coord C1 exon
chr22:10729859-10729926
Coord A exon
chr22:10730020-10730195
Coord C2 exon
chr22:10730642-10730683
Length
176 bp
Sequences
Splice sites
3' ss Seq
ACATTTGTGATATCTTTTAGGAA
3' ss Score
10.49
5' ss Seq
TCGGTATGC
5' ss Score
7.85
Exon sequences
Seq C1 exon
ATCAAGAACATCTTTAGCGCCTCTGGAGTGGCCAGTCATTTTATCGACTGCCAGATAGTGGCGTACGG
Seq A exon
GAATATCAACTCAAATGTGATGACCACAATTCGTTTAATCTTCCGGGTCTCTCAAATTCAGGGGTACAGCCAGAGTTTCGTTCAAGACATCCTACGCAATGGATTAAAGGCTCTTCTGAATGGGAAACACATTGTTGTTCCAGAATATGGGGAGATCAGTGGCATCGTCCTTCTCG
Seq C2 exon
GAGCCAGTGGAAAGTCATTCTACGAGATCGGGAATGATATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000029841-'3-6,'3-3,4-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0139015=SEA=FE(23.9=100)
A:
PF0139015=SEA=PD(32.6=50.0)
C2:
PF0005713=Ldl_recept_a=PU(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAACATCTTTAGCGCCTCTGG
R:
TTATATCATTCCCGATCTCGTAGAA
Band lengths:
106-282
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]