RnoEX6031011 @ rn6
Exon Skipping
Gene
ENSRNOG00000038948 | Stab2
Description
stabilin 2 [Source:RGD Symbol;Acc:628822]
Coordinates
chr7:27380837-27382717:-
Coord C1 exon
chr7:27382604-27382717
Coord A exon
chr7:27380886-27380905
Coord C2 exon
chr7:27380837-27380884
Length
20 bp
Sequences
Splice sites
3' ss Seq
AATGTTCTTCCTCTCCTTAGACA
3' ss Score
9.92
5' ss Seq
TTCATCTAC
5' ss Score
-33.83
Exon sequences
Seq C1 exon
GGGGACGGCAGTGGACTGGTGAGCCTGAGCAGCTGCCGCTCGACGTTGCTTACAGCGACAACGAGACAGTGGCCACGCCAGATTGCCAGGCTGTGCAGACCCTTCACTTCCAGG
Seq A exon
ACACGACCGTAGGAGTATTC
Seq C2 exon
TCTACGCTCCCACTGGGCAGGTACAAACTGACATTTGACAACGCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000038948-'79-75,'79-74,80-75=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.154 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(15.8=15.4)
A:
PF0019312=Xlink=PU(3.3=42.9)
C2:
PF0019312=Xlink=FE(16.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGCTCGACGTTGCTTACAG
R:
CAGTTTGTACCTGCCCAGTGG
Band lengths:
109-129
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]