GgaEX1055795 @ galGal4
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
stabilin 2 [Source:HGNC Symbol;Acc:HGNC:18629]
Coordinates
chr1:54932657-54956647:-
Coord C1 exon
chr1:54956591-54956647
Coord A exon
chr1:54934355-54934488
Coord C2 exon
chr1:54932657-54932776
Length
134 bp
Sequences
Splice sites
3' ss Seq
GTCCCTCTCTCTCTTTGCAGACA
3' ss Score
13.78
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
GAAAAGTGCAGAATTTGTTCGCAACCATCAAGTTGCCCCCCAGGAACAAAAGAAATA
Seq A exon
ACACAACAGTTGGAGTTTTCCATTTACGGTCCCCAAAGGGGCAGTACAAAATGACTTATGAGAAGGCAAAGGAGGCCTGTGCCAATGAGTCAGCCACCGTCGCCACATACAACCAGCTGCTGTATGCACAGAAG
Seq C2 exon
AAAATCATGGCTTACTCCAACAGCTCTCGGAAAGGGAGAGCATTCCTGCGGTACCTCACCGACCTGTCAGTGCGTGCCACACTCTTCGCTCCAAATGACAGTGGACTAAGGGAAAATCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751_MULTIEX1-25/27=C1-C2
Average complexity
C3*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0019312=Xlink=PU(43.6=91.1)
C2:
PF0246917=Fasciclin=FE(28.7=100)
Main Skipping Isoform:
ENSGALT00000020806fB12470
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCAGAATTTGTTCGCAACCA
R:
TGATTTTCCCTTAGTCCACTGTCA
Band lengths:
171-305
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]