MmuEX6050477 @ mm10
Exon Skipping
Gene
ENSMUSG00000035459 | Stab2
Description
stabilin 2 [Source:MGI Symbol;Acc:MGI:2178743]
Coordinates
chr10:86850778-86855241:-
Coord C1 exon
chr10:86855100-86855241
Coord A exon
chr10:86853545-86853678
Coord C2 exon
chr10:86850778-86850940
Length
134 bp
Sequences
Splice sites
3' ss Seq
TAATCTCTCTCCTCTTCTAGACA
3' ss Score
9.39
5' ss Seq
AAGGTAAGT
5' ss Score
11
Exon sequences
Seq C1 exon
GGCAAGCAGAAGTGTGAATGTAAAAGTCACTATGTCGGGGATGGACGGGACTGTGAGCCCGAACAGCTGCCCCTTGACCGCTGCTTACAGGACAACGGACAATGCCACCCAGATGCCAACTGTGTGGACCTTCATTTCCAGG
Seq A exon
ACACTACTGTTGGCGTATTCCACCTACGCTCCCCACTGGGCCAGTACAAACTGACATTTGACAAAGCCAAAGAGGCCTGTGCCAAGGAAGCTGCATCCATAGCCACCTACAACCAGCTCTCCTATGCCCAGAAG
Seq C2 exon
GCCAAGTATCACCTCTGCTCAGCTGGCTGGCTGGAGAGTGGGCGGGTTGCCTACCCCACGATCTACGCCTCTAAGAAATGTGCAAACATTGTGGGGATTGTAGACTACGGAACCAGGACCAACAAGAGTGAAATGTGGGACGTCTTCTGTTACAGAATGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035459-'87-98,'87-96,89-98=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(44.7=35.4)
A:
PF0019312=Xlink=PU(44.1=91.1)
C2:
PF0019312=Xlink=PD(53.8=90.9),PF129472=EGF_3=PU(63.0=52.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACTATGTCGGGGATGGACG
R:
CTCTTGTTGGTCCTGGTTCCG
Band lengths:
244-378
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types