DreEX0075667 @ danRer10
Exon Skipping
Gene
ENSDARG00000045748 | stab2
Description
stabilin 2 [Source:ZFIN;Acc:ZDB-GENE-041210-336]
Coordinates
chr4:10759069-10760060:+
Coord C1 exon
chr4:10759069-10759210
Coord A exon
chr4:10759673-10759806
Coord C2 exon
chr4:10759895-10760060
Length
134 bp
Sequences
Splice sites
3' ss Seq
ATCTCTTTCTCATCATTCAGATA
3' ss Score
9.67
5' ss Seq
CAGGTGGTG
5' ss Score
1.16
Exon sequences
Seq C1 exon
GGTAAGAGGAAATGTGAGTGTAAAGATAGCTACGTTGGTGATGGGATCGATTGTGAAGCAAAGGTGTTGCCTGTCAATCGCTGTCTAGTAGATAACGGACAGTGCCATTCAGATGCTCAGTGCACAGACCTGCACCATGAGG
Seq A exon
ATAAAACATTAGGGGTTTTCCATTATCGCTCCACCAATGGAACATACAAGCTCAACTACACCATGGCACAGGAGGCCTGCAAGGAGGCGGGAAGCACCATCGCTACCTACATGCAGCTGTCCTATGCGCAGCAG
Seq C2 exon
GCAGGGTACAGCTTGTGCACAGCAGGCTGGCTTGACAAAGCAAGGGTCGCGTATCCCATGAGCTTCTCTAGCCCTAGATGTGGCTCCGGACACGTTGGTATTGTGGATTACGGGGTTCGGAATAACCTAAGTGAGACGTGGGACACATTCTGCTACAGAGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045748-'72-74,'72-73,74-74
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(44.7=35.4)
A:
PF0019312=Xlink=PU(43.6=91.1)
C2:
PF0019312=Xlink=PD(54.3=91.1),PF129472=EGF_3=PU(39.3=19.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGTTGGTGATGGGATCGATTGT
R:
TGTCCCACGTCTCACTTAGGT
Band lengths:
255-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]