GgaEX1055795 @ galGal3
Exon Skipping
Gene
ENSGALG00000012751 | STAB2
Description
NA
Coordinates
chr1:56826970-56828618:-
Coord C1 exon
chr1:56828477-56828618
Coord A exon
chr1:56827995-56828128
Coord C2 exon
chr1:56826970-56827135
Length
134 bp
Sequences
Splice sites
3' ss Seq
GTCCCTCTCTCTCTTTGCAGACA
3' ss Score
13.78
5' ss Seq
AAGGTGATG
5' ss Score
5.22
Exon sequences
Seq C1 exon
GACAAACGCAAGTGTGACTGTAAAAACAACTACATCGGTGATGGGCTGAACTGCTCAGTGATGCAGCTTCCTCTTGACCGCTGCTTGCAGGACAACGGGCAGTGCCACCCTGATGCAGACTGCACCGACCTCCACTTCCAAG
Seq A exon
ACACAACAGTTGGAGTTTTCCATTTACGGTCCCCAAAGGGGCAGTACAAAATGACTTATGAGAAGGCAAAGGAGGCCTGTGCCAATGAGTCAGCCACCGTCGCCACATACAACCAGCTGCTGTATGCACAGAAG
Seq C2 exon
GCACGGTACCACCTGTGTGCAGCCGGCTGGCTGGATGGCCAAAGGGTGGGCTACCCTACTGCCTTCTCATCACCAAACTGCGGCGCTGGGTACGTCGGCATCGTGGACTATGGGAGAAGGGTCAACCTGAGTGAAACATGGGATGTCTTCTGCTACAGGGAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000012751-'59-61,'59-60,60-61=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF129472=EGF_3=PD(44.7=35.4)
A:
PF0019312=Xlink=PU(43.6=91.1)
C2:
PF0019312=Xlink=PD(54.3=91.1),PF129472=EGF_3=PU(22.7=8.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTACATCGGTGATGGGCTGA
R:
CTCAGGTTGACCCTTCTCCCA
Band lengths:
245-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]